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RefPlus

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of RefPlus; for the stable release version, see RefPlus.

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.


Bioconductor version: Development (3.19)

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Citation (from within R, enter citation("RefPlus")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RefPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.73.1
In Bioconductor since BioC 2.0 (R-2.5) (17 years)
License GPL (>= 2)
Depends R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
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Suggests affydata
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary RefPlus_1.73.1.zip (64-bit only)
macOS Binary (x86_64) RefPlus_1.73.1.tgz
macOS Binary (arm64) RefPlus_1.73.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RefPlus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RefPlus
Package Short Url https://bioconductor.org/packages/RefPlus/
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