OmicsMarkeR

DOI: 10.18129/B9.bioc.OmicsMarkeR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of OmicsMarkeR; for the stable release version, see OmicsMarkeR.

Classification and Feature Selection for 'Omics' Datasets

Bioconductor version: Development (3.12)

Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.

Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>

Citation (from within R, enter citation("OmicsMarkeR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("OmicsMarkeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Classification, FeatureExtraction, Metabolomics, Software
Version 1.21.1
In Bioconductor since BioC 3.1 (R-3.2) (5.5 years)
License GPL-3
Depends R (>= 3.2.0)
Imports graphics, stats, utils, plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1)
LinkingTo
Suggests testthat, BiocStyle, knitr
SystemRequirements
Enhances
URL http://github.com/cdeterman/OmicsMarkeR
BugReports http://github.com/cdeterman/OmicsMarkeR/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/OmicsMarkeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OmicsMarkeR
Package Short Url https://bioconductor.org/packages/OmicsMarkeR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: