DOI: 10.18129/B9.bioc.MotIV    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of MotIV; for the stable release version, see MotIV.

Motif Identification and Validation

Bioconductor version: Development (3.12)

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at>, Raphael Gottardo <rgottard at>

Citation (from within R, enter citation("MotIV")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifAnnotation, Software
Version 1.45.2
In Bioconductor since BioC 2.6 (R-2.11) (10.5 years)
License GPL-2
Depends R (>= 2.10), graphics, BiocGenerics, GenomicRanges
Imports methods, stats, grid, S4Vectors, IRanges(>= 1.13.5), Biostrings, lattice, rGADEM, utils
Suggests rtracklayer
SystemRequirements GNU Scientific Library >= 1.6 (
Depends On Me
Imports Me TCGAWorkflow
Suggests Me
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