CSSP

DOI: 10.18129/B9.bioc.CSSP  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of CSSP; for the stable release version, see CSSP.

ChIP-Seq Statistical Power

Bioconductor version: Development (3.18)

Power computation for ChIP-Seq data based on Bayesian estimation for local poisson counting process.

Author: Chandler Zuo, Sunduz Keles

Maintainer: Chandler Zuo<zuo at stat.wisc.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CSSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Bayesian, ChIPSeq, QualityControl, Sequencing, Software
Version	1.39.1
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL-2
Depends
Imports	methods, splines, stats, utils
LinkingTo
Suggests	testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CSSP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CSSP
Package Short Url	https://bioconductor.org/packages/CSSP/
Package Downloads Report	Download Stats