## ----BiocManagerGetADAMgui, eval=FALSE------------------------------------- # if (!requireNamespace("BiocManager", quietly = TRUE)){ # install.packages("BiocManager") # BiocManager::install("ADAMgui")} ## ----GitHubGetADAMgui, eval = FALSE---------------------------------------- # BiocManager::install('jrybarczyk/ADAMgui') ## ----LoadADAMgui, eval=TRUE, message=FALSE--------------------------------- library(ADAMgui) ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- library(ADAMgui) data("ResultAnalysisAedes") ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- library(ADAMgui) data("ResultAnalysisAedes") dt<-ResultAnalysisAedes[1:10,] ## ----eval=FALSE, fig.height=6, fig.width=6--------------------------------- # write.table(dt,'ResultAnalysisAedes.txt',sep='\t',quote = F, # row.names = F,col.names = T) ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- library(ADAMgui) ## ----eval=FALSE, fig.height=6, fig.width=6--------------------------------- # GFAGpathUi(TRUE) #Run the app in your default browser. # GFAGpathUi(FALSE) #Run the app in R (your local machine). ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- library(ADAM) library(ADAMgui) ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- data("ResultAnalysisAedes") # GFAG Output data ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- data("ExpressionAedes") # target expression data ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- data("GeneFunctionAedes") # Path-to-Target relationship data ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- data("DiffAedes") # target differential expression ## ----eval=FALSE, fig.height=6, fig.width=6--------------------------------- # # # save the GFAG output file # write.table(dt,'ResultAnalysisAedes.txt',sep='\t',quote = F, # row.names = F,col.names = T) # # # save the target expression file # write.table(dt,'ExpressionAedes.txt',sep='\t',quote = F, # row.names = F,col.names = T) # # # save the Path-to-Target relationship file # write.table(dt,'GeneFunctionAedes.txt',sep='\t',quote = F, # row.names = F,col.names = T) # # # save the target differential expression file # write.table(dt,'DiffAedes.txt',sep='\t',quote = F, # row.names = F,col.names = T) ## ----eval=TRUE, fig.height=6, fig.width=6---------------------------------- library(ADAM) library(ADAMgui) ## ----eval=FALSE, fig.height=6, fig.width=6--------------------------------- # GFAGtargetUi(TRUE) #Run the app in your default browser. # GFAGtargetUi(FALSE) #Run the app in R (your local machine). ## ----SessionInfo, eval=TRUE, message=FALSE, echo=FALSE--------------------- sessionInfo()