Changes in version 1.12.0 OTHER CHANGES o Use Roxygen to generate documentation. Changes in version 1.10.0 OTHER CHANGES o Minor metadata updates. Changes in version 1.8.0 NEW FEATURES o Added a “private_clonotypes” function. Changes in version 1.4.0 BUG FIXES o Minor packaging corrections (NAMESPACE, etc.). Changes in version 1.2.0 NEW FEATURES o Added a “long” option to yassai_identifier(), where every amino acid is represented. This solves the problem of ID collisions, where a single identifier could be produced by two different clonotypes. o Added a new option to clonotype_table() for randomly sampling libraries. o Added a new mode to common_clonotypes() for calculating the abundance relatively to one library. o Unified the syntax of common_clonotypes() and unique_clonotypes(). BUG FIXES o Removed infinite loop in yassai_identifier() when the germinal V sequence was completely absent from the CDR3. o Corrected output bug where “integer(0)” was returned if the V–J boundary was a codon boundary. o yassai_identifier(): properly encode the names of the V and J segments. Changes in version 1.0.0 o Initial release in Bioconductor.