CHANGES IN VERSION 1.1.4 ------------------------ - changed 'colOverride' to 'colCustom' - added a new 'shape' parameter to control the shape of plotted points - added a new 'shapeCustom' parameter, akin to functionality supplied by 'colCustom' (formerly 'colOverride') - added functionality to add title, subtitle, and caption (parameters: title, subtitle, caption, titleLabSize, subtitleLabSize, captionLabSize = 12) - added functionality to add extra vertical and horizontal lines (parameters: hline, hlineType, hlineCol, hlineWidth, vline, vlineType, vlineCol, vlineWidth) - changed 'colConnectors' default from "black" to "grey10" - added extra parameters for line connectors (parameters: typeConnectors, endsConnectors, lengthConnectors) - 'labhjust' and 'labvjust' are now 'transcriptLabhjust' and 'transcriptLabvjust', respectively - user can now specify to draw transcript labels as text and text in boxes via 'boxedlabels' (TRUE/FALSE) CHANGES IN VERSION 1.1.2 ------------------------ - added functionality to shade specific genes in the plot space (parameters: shade, shadeLabel, shadeAlpha, shadeFill, shadeSize, shadeBins) - added new parameters 'labhjust' and 'labvjust' for fine tuning position of labels - suppress warnings about removal of missing values - now easier to hide the legend via legendVisible = TRUE/FALSE CHANGES IN VERSION 1.0.0 ------------------------ - user can now supply her/his/its own colour vector to label the points - default is to now draw grid lines and only have left and bottom borders - when selectLab is not NULL, even variables that do not pass the thresholds are now labelled along with those that do, even when DrawConnectors is either TRUE or FALSE. - correctly catches non-numeric x and / or y variables, and throws error. - the function now tolerates P values of 0 (zero) and replaces these with the lowest possible double value, given a user's specific computer architecture and R version.