signet

DOI: 10.18129/B9.bioc.signet    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see signet.

signet: Selection Inference in Gene NETworks

Bioconductor version: 3.9

An R package to detect selection in biological pathways. Using gene selection scores and biological pathways data, one can search for high-scoring subnetworks of genes within pathways and test their significance.

Author: Alexandre Gouy [aut, cre]

Maintainer: Alexandre Gouy <alexandre.gouy at iee.unibe.ch>

Citation (from within R, enter citation("signet")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("signet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signet")

 

HTML R Script signet tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, GraphAndNetwork, KEGG, NetworkEnrichment, Pathways, Software
Version 1.4.0
In Bioconductor since BioC 3.7 (R-3.5) (1.5 years)
License GPL-2
Depends R (>= 3.4.0)
Imports graph, igraph, RBGL, graphics, utils, stats, methods
LinkingTo
Suggests graphite, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package signet_1.4.0.tar.gz
Windows Binary signet_1.4.0.zip
Mac OS X 10.11 (El Capitan) signet_1.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/signet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/signet
Package Short Url https://bioconductor.org/packages/signet/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: