marray

DOI: 10.18129/B9.bioc.marray    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see marray.

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 3.9

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Citation (from within R, enter citation("marray")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("marray")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")

 

PDF R Script marray Normalization
PDF R Script marray Overview
PDF R Script marrayClasses Overview
PDF R Script marrayClasses Tutorial (short)
PDF R Script marrayInput Introduction
PDF R Script marrayPlots Overview
PDF   Reference Manual
Text   LICENSE

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Version 1.62.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License LGPL
Depends R (>= 2.10.0), limma, methods
Imports
LinkingTo
Suggests tkWidgets
SystemRequirements
Enhances
URL http://www.maths.usyd.edu.au/u/jeany/
Depends On Me beta7, CGHbase, convert, dyebias, dyebiasexamples, FEM, maigesPack, MineICA, nnNorm, OLIN, RBM, stepNorm, TurboNorm
Imports Me arrayQuality, ChAMP, methylPipe, MSstats, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse
Suggests Me AgiMicroRna, DEGraph, Mfuzz
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package marray_1.62.0.tar.gz
Windows Binary marray_1.62.0.zip
Mac OS X 10.11 (El Capitan) marray_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/marray
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/marray
Package Short Url https://bioconductor.org/packages/marray/
Package Downloads Report Download Stats

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