hypeR

DOI: 10.18129/B9.bioc.hypeR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see hypeR.

Hyper Enrichment

Bioconductor version: 3.9

Geneset enrichment analysis based on hyper-geometric test.

Author: Anthony Federico <anfed at bu.edu>, Stefano Monti <smonti at bu.edu>

Maintainer: Anthony Federico <anfed at bu.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hypeR")

 

HTML	R Script	hypeR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	1.00.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6.0)
Imports	plotly, DT, magrittr, dplyr, openxlsx, msigdbr
LinkingTo
Suggests	devtools, testthat, knitr, httr
SystemRequirements
Enhances
URL	https://github.com/montilab/hypeR
BugReports	https://github.com/montilab/hypeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hypeR_1.00.0.tar.gz
Windows Binary	hypeR_1.00.0.zip
Mac OS X 10.11 (El Capitan)	hypeR_1.00.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hypeR
Package Short Url	https://bioconductor.org/packages/hypeR/
Package Downloads Report	Download Stats