goProfiles

DOI: 10.18129/B9.bioc.goProfiles    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see goProfiles.

goProfiles: an R package for the statistical analysis of functional profiles

Bioconductor version: 3.9

The package implements methods to compare lists of genes based on comparing the corresponding 'functional profiles'.

Author: Alex Sanchez, Jordi Ocana and Miquel Salicru

Maintainer: Alex Sanchez <asanchez at ub.edu>

Citation (from within R, enter citation("goProfiles")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("goProfiles")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goProfiles")

 

PDF R Script goProfiles Vignette
PDF goProfiles-comparevisual.pdf
PDF goProfiles-plotProfileMF.pdf
PDF   Reference Manual

Details

biocViews Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version 1.46.0
In Bioconductor since BioC 2.2 (R-2.7) (11.5 years)
License GPL-2
Depends Biobase, AnnotationDbi, GO.db, CompQuadForm, stringr
Imports
LinkingTo
Suggests org.Hs.eg.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package goProfiles_1.46.0.tar.gz
Windows Binary goProfiles_1.46.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) goProfiles_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/goProfiles
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/goProfiles
Package Short Url https://bioconductor.org/packages/goProfiles/
Package Downloads Report Download Stats

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