erccdashboard

DOI: 10.18129/B9.bioc.erccdashboard    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see erccdashboard.

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: 3.9

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at gmail.com>

Citation (from within R, enter citation("erccdashboard")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("erccdashboard")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")

 

PDF R Script erccdashboard examples
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version 1.18.0
In Bioconductor since BioC 3.0 (R-3.1) (5 years)
License GPL (>=2)
Depends R (>= 3.2), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)
Imports edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/munrosa/erccdashboard http://tinyurl.com/erccsrm
BugReports https://github.com/munrosa/erccdashboard/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package erccdashboard_1.18.0.tar.gz
Windows Binary erccdashboard_1.18.0.zip
Mac OS X 10.11 (El Capitan) erccdashboard_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/erccdashboard
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/erccdashboard
Package Short Url https://bioconductor.org/packages/erccdashboard/
Package Downloads Report Download Stats

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