TCseq

DOI: 10.18129/B9.bioc.TCseq    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TCseq.

Time course sequencing data analysis

Bioconductor version: 3.9

Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of temporal patterns of time course data.

Author: Mengjun Wu <minervajunjun at gmail.com>, Lei Gu <leigu at broadinstitute.org>

Maintainer: Mengjun Wu <minervajunjun at gmail.com>

Citation (from within R, enter citation("TCseq")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TCseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TCseq")

 

PDF R Script TCseq Vignette
PDF   Reference Manual

Details

biocViews ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization
Version 1.8.0
In Bioconductor since BioC 3.5 (R-3.4) (2.5 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit
LinkingTo
Suggests testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TCseq_1.8.0.tar.gz
Windows Binary TCseq_1.8.0.zip
Mac OS X 10.11 (El Capitan) TCseq_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TCseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TCseq
Package Short Url https://bioconductor.org/packages/TCseq/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: