R4RNA

DOI: 10.18129/B9.bioc.R4RNA    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see R4RNA.

An R package for RNA visualization and analysis

Bioconductor version: 3.9

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

Author: Daniel Lai, Irmtraud Meyer <irmtraud.meyer at cantab.net>

Maintainer: Daniel Lai <jujubix at cs.ubc.ca>

Citation (from within R, enter citation("R4RNA")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("R4RNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("R4RNA")

 

PDF R Script R4RNA.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (3.5 years)
License GPL-3
Depends R (>= 3.2.0), Biostrings(>= 2.38.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.e-rna.org/r-chie/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package R4RNA_1.12.0.tar.gz
Windows Binary R4RNA_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) R4RNA_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/R4RNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/R4RNA
Package Short Url https://bioconductor.org/packages/R4RNA/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: