MergeMaid

DOI: 10.18129/B9.bioc.MergeMaid    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MergeMaid.

Merge Maid

Bioconductor version: 3.9

The functions in this R extension are intended for cross-study comparison of gene expression array data. Required from the user is gene expression matrices, their corresponding gene-id vectors and other useful information, and they could be 'list','matrix', or 'ExpressionSet'. The main function is 'mergeExprs' which transforms the input objects into data in the merged format, such that common genes in different datasets can be easily found. And the function 'intcor' calculate the correlation coefficients. Other functions use the output from 'modelOutcome' to graphically display the results and cross-validate associations of gene expression data with survival.

Author: Xiaogang Zhong <zhong at ams.jhu.edu> Leslie Cope <cope at jhu.edu> Elizabeth Garrett <esg at jhu.edu> Giovanni Parmigiani <gp at jhu.edu>

Maintainer: Xiaogang Zhong <zhong at ams.jhu.edu>

Citation (from within R, enter citation("MergeMaid")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MergeMaid")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MergeMaid")

 

PDF MergeMaid primer
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Software, Visualization
Version 2.56.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0), survival, Biobase, MASS, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://astor.som.jhmi.edu/MergeMaid
Depends On Me
Imports Me metaArray, XDE
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MergeMaid_2.56.0.tar.gz
Windows Binary MergeMaid_2.56.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) MergeMaid_2.56.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MergeMaid
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MergeMaid
Package Short Url https://bioconductor.org/packages/MergeMaid/
Package Downloads Report Download Stats

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