FISHalyseR

DOI: 10.18129/B9.bioc.FISHalyseR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FISHalyseR.

FISHalyseR a package for automated FISH quantification

Bioconductor version: 3.9

FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.

Author: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>

Maintainer: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>

Citation (from within R, enter citation("FISHalyseR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FISHalyseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FISHalyseR")

 

PDF R Script FISHAlyseR Automated fluorescence in situ hybridisation quantification in R
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, Software
Version 1.18.0
In Bioconductor since BioC 3.1 (R-3.2) (4.5 years)
License Artistic-2.0
Depends EBImage, abind
Imports
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FISHalyseR_1.18.0.tar.gz
Windows Binary FISHalyseR_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) FISHalyseR_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/FISHalyseR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FISHalyseR
Package Short Url https://bioconductor.org/packages/FISHalyseR/
Package Downloads Report Download Stats

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