DTA

DOI: 10.18129/B9.bioc.DTA    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DTA.

Dynamic Transcriptome Analysis

Bioconductor version: 3.9

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Author: Bjoern Schwalb, Benedikt Zacher, Sebastian Duemcke, Achim Tresch

Maintainer: Bjoern Schwalb <schwalb at lmb.uni-muenchen.de>

Citation (from within R, enter citation("DTA")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DTA")

 

PDF R Script A guide to Dynamic Transcriptome Analysis (DTA)
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, Transcription
Version 2.30.0
In Bioconductor since BioC 2.9 (R-2.14) (8 years)
License Artistic-2.0
Depends R (>= 2.10), LSD
Imports scatterplot3d
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DTA_2.30.0.tar.gz
Windows Binary DTA_2.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DTA_2.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DTA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DTA
Package Short Url https://bioconductor.org/packages/DTA/
Package Downloads Report Download Stats

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