ChIPComp

DOI: 10.18129/B9.bioc.ChIPComp    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ChIPComp.

Quantitative comparison of multiple ChIP-seq datasets

Bioconductor version: 3.9

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

Author: Hao Wu, Li Chen, Zhaohui S.Qin, Chi Wang

Maintainer: Li Chen <li.chen at emory.edu>

Citation (from within R, enter citation("ChIPComp")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPComp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPComp")

 

PDF R Script ChIPComp
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Coverage, DataImport, Genetics, MultipleComparison, Sequencing, Software, Transcription
Version 1.14.0
In Bioconductor since BioC 3.2 (R-3.2) (4 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, rtracklayer, GenomeInfoDb, S4Vectors
Imports Rsamtools, limma, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, BiocGenerics
LinkingTo
Suggests BiocStyle, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ChIPComp_1.14.0.tar.gz
Windows Binary ChIPComp_1.14.0.zip
Mac OS X 10.11 (El Capitan) ChIPComp_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ChIPComp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ChIPComp
Package Short Url https://bioconductor.org/packages/ChIPComp/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: