readWholeGenomeAnnotation {srnadiff}R Documentation

Segmentation using an annotation file that contains every genomic feature; it extracts the miRNAs.

Description

Segmentation using an annotation file that contains every genomic feature; it extracts the miRNAs.

Usage

readWholeGenomeAnnotation(fileName)

Arguments

fileName

The annotation file name in GFF/GTF format.

Value

A GRanges.

Examples

dir        <- system.file("extdata", package="srnadiff", mustWork = TRUE)
gtfFile    <- file.path(dir, "Homo_sapiens.GRCh38.76.gtf.gz")
annotation <- readWholeGenomeAnnotation(gtfFile)


[Package srnadiff version 1.4.0 Index]