updateSlalom {slalom} | R Documentation |
Do one variational update of a SlalomModel to infer model parameters.
updateSlalom(object)
object |
a |
Update the model with one iteration using variational Bayes methods to infer parameters.
an 'Rcpp_SlalomModel' object
Davis McCarthy
gmtfile <- system.file("extdata", "reactome_subset.gmt", package = "slalom") genesets <- GSEABase::getGmt(gmtfile) data("mesc") model <- newSlalomModel(mesc, genesets, n_hidden = 5, min_genes = 10) model <- initSlalom(model) model <- updateSlalom(model)