get_peptide_corr_df {proBatch}R Documentation

Transform square correlation matrix into long data frame of correlations

Description

Transform square correlation matrix into long data frame of correlations

Usage

get_peptide_corr_df(peptide_cor, peptide_annotation,
  protein_col = "ProteinName", feature_id_col = "peptide_group_label")

Arguments

peptide_cor

peptide correlation matrix (square)

peptide_annotation

df with petpides and their corresponding proteins

protein_col

the column name in peptide_annotation with protein names

feature_id_col

column in peptide_annotation that captures peptide names are found

Value

dataframe with peptide correlation coefficients that are suggested to use for plotting in plot_peptide_corr_distribution as plot_param:


[Package proBatch version 1.0.0 Index]