example_sample_annotation {proBatch}R Documentation

Sample annotation data version 1

Description

This is data from BXD aging study with mock instruments to show how instrument-specific functionality works

Usage

example_sample_annotation

Format

A data frame with 233 rows and 11 variables:

FullRunName

name of the file, in most functions used for sample_id_col

MS_batch

mass-spectrometry batch: 7-level factor of manually annotated batches

EarTag

mouse ID, i.e. ID of the biological object

Strain

mouse strain ID - biological covariate #1

Diet

diet - either HFD = 'High Fat Diet' or CD = 'Chow Diet'. Mix stands for mixture of several samples

Sex

mice sex - 3-level biological covariate. Possible values - ”

RunDate

mass-spectrometry running date. In combination with RunTime used for running order determination

RunTime

mass-spectrometry running time. In combination with RunDate used for running order determination

DateTime

numeric date and time generated by date_to_sample_order

order

order of samples generated by sorting DateTime in date_to_sample_order

digestion_batch

peptide digestion batch: 5-level factor of manually annotated batches

...


[Package proBatch version 1.0.0 Index]