normalize_data {proBatch} | R Documentation |
Normalization brings the samples to the same scale
normalize_data(data_matrix, normalizeFunc = c("quantile", "medianCentering"), log_base = NULL)
data_matrix |
raw data matrix (features in rows and samples in columns) |
normalizeFunc |
global batch normalization method ('quantile' or 'MedianCentering') |
log_base |
whether to log transform data matrix before normalization ('NULL', '2' or '10') |
data_matrix
-size matrix, with columns normalized
quantile_normalized_matrix <- normalize_data(example_proteome_matrix, normalizeFunc = "quantile", log_base = 2)