getKegg {phenoTest} | R Documentation |
This function creates a list of gene sets based on KEGG pathways terms. It is species-specific, and returns a list of gene sets, each of which is a character vector of Entrez gene identifiers.
This function is a wraper to the function KeggGeneSets
from
package HTSanalyzeR
.
getKegg(species = "Dm")
species |
a single character value specifying the species: "Dm" ("Drosophila_ melanogaster"), "Hs" ("Homo_sapiens"), "Rn" ("Rattus_norvegicus"), "Mm" ("Mus_musculus") or "Ce" ("Caenorhabditis_elegans")). |
This function relies on the following packages: GSEABase, KEGG.db.
a list of gene sets, with names as KEGG pathway IDs. Each gene set is a character vector of Entrez gene identifiers.
Evarist Planet.
getGo
#library(KEGG.db) #library(org.Hs.eg.db) #kegg.Hs <- getKegg('Hs') #str(kegg.Hs) #kegg.Hs[1:2]