getArrayABsignal {compartmap} | R Documentation |
getArrayABsignal
returns estimated A/B compartments from methylation array data.
getArrayABsignal(obj, res = 1e+06, parallel = FALSE, allchrs = FALSE, chr = NULL, targets = NULL, ...)
obj |
Input GenomicRatioSet object |
res |
Compartment resolution (in bp) |
parallel |
Should the inference be done in parallel? |
allchrs |
Whether all autosomes should be used for A/B inference |
chr |
Specific chromosomes to analyze |
targets |
Specify samples to use as shrinkage targets |
... |
Additional arguments |
This function is modified from the minfi::compartments to infer A/B compartments from array data
A p x n matrix (samples as columns and compartments as rows) of compartments