retrieve.probesets {RPA} | R Documentation |
List probes for each probeset in taxonomic data.
retrieve.probesets(tax.table, level = "species", name = NULL)
tax.table |
data.frame with oligo - phylotype mapping info |
level |
phylotype level for probesets |
name |
specify phylotypes to check (optional) |
A list. Probes for each phylotype.
Contact: Leo Lahti microbiome-admin@googlegroups.com
See citation('microbiome')
#tax.table <- GetPhylogeny('HITChip') #sets <- retrieve.probesets(tax.table, 'species', 'Weissella confusa')