UTR3usage {InPAS} | R Documentation |
calculate the usage of long and short form of UTR3 for the results of CPsites
UTR3usage(CPsites, coverage, hugeData, BPPARAM = NULL, phmm = FALSE)
CPsites |
outputs of CPsites |
coverage |
coverage for each sample, outputs of coverageFromBedGraph |
hugeData |
is this dataset consume too much memory? if it is TRUE, the coverage will be saved into tempfiles. |
BPPARAM |
An optional |
phmm |
prepare data for singleSample analysis? default is FALSE |
GRanges object
Jianhong Ou