fisher.exact.test {InPAS} | R Documentation |
do fisher exact test for two group datasets
fisher.exact.test(UTR3eset, gp1, gp2)
UTR3eset |
output of getUTR3eSet |
gp1 |
tag names of group 1 |
gp2 |
tag names of group 2 |
a matrix of test results
Jianhong Ou
singleSampleAnalyze
,singleGroupAnalyze
,
limmaAnalyze
path <- file.path(find.package("InPAS"), "extdata") load(file.path(path, "eset.MAQC.rda")) tags <- colnames(eset$PDUI.log2) res <- fisher.exact.test(eset, gp1=tags[1:2], gp2=tags[3:4])