ENCODExplorer-package |
ENCODExplorer |
clean_column |
Clean a single column of the data.frame |
clean_table |
Clean a data.frame that was produced by ENCODE REST API |
createDesign |
Create a design for the files associated with the result of a queryEncode, fuzzySearch research or a 'data.table' from createDesign. |
downloadEncode |
downloadEncode is used to download a serie of files or datasets using their accession. |
download_dt_file |
Downloads all files inside a data.table. |
download_single_file |
download_single_file Downloads a single file and checks if md5 checksums match. |
ENCODExplorer |
ENCODExplorer |
fuzzySearch |
Fuzzysearch is a searching function for a string or a list of string within the encode_df 'data.table'. For faster processing, pass encode_df object as database parameter. |
get_encode_df |
Returns a "light" version of ENCODE file metadata. |
get_encode_df_demo |
Get a demo encode_df |
get_encode_df_full |
Concatenates all available file metadata into a single data table. |
queryEncode |
Produce a subset of data following predefined criteria |
queryEncodeGeneric |
Produce a subset of data following predefined criteria. |
searchEncode |
Simulate a query on ENCODE website and return the result as a 'data.frame' |
searchToquery |
Convert searchEncode output in queryEncode output. |
shinyEncode |
Launch a shiny interface for ENCODExplorer |