sevenbridges

DOI: 10.18129/B9.bioc.sevenbridges    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

Bioconductor version: 3.8

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Nan Xiao [aut, cre], Tengfei Yin [aut], Emile Young [ctb], Dusan Randjelovic [ctb], Seven Bridges Genomics [cph, fnd]

Maintainer: Nan Xiao <nan.xiao at sevenbridges.com>

Citation (from within R, enter citation("sevenbridges")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("sevenbridges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sevenbridges")

 

HTML R Script Complete Guide for Seven Bridges API R Client
HTML R Script Creating Your Docker Container and Command Line Interface (with docopt)
HTML R Script Describe and Execute CWL Tools/Workflows in R
HTML R Script Find Data on CGC via Data Browser and Datasets API
HTML R Script IDE Container: RStudio Server, Shiny Server, and More
HTML R Script Master Tutorial: Use R for Cancer Genomics Cloud
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, Software, ThirdPartyClient
Version 1.12.5
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License Apache License 2.0 | file LICENSE
Depends methods, utils, stats
Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, dplyr
LinkingTo
Suggests knitr, rmarkdown, testthat, readr
SystemRequirements
Enhances
URL https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r
BugReports https://github.com/sbg/sevenbridges-r/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sevenbridges_1.12.5.tar.gz
Windows Binary sevenbridges_1.12.5.zip
Mac OS X 10.11 (El Capitan) sevenbridges_1.12.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/sevenbridges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sevenbridges
Package Short Url http://bioconductor.org/packages/sevenbridges/
Package Downloads Report Download Stats

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