rnaSeqMap

DOI: 10.18129/B9.bioc.rnaSeqMap    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rnaSeqMap.

rnaSeq secondary analyses

Bioconductor version: 3.8

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("rnaSeqMap")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rnaSeqMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaSeqMap")

 

PDF R Script rnaSeqMap primer
PDF   Reference Manual

Details

biocViews Annotation, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, SAGE, Sequencing, Software, Transcription, Visualization
Version 2.40.1
In Bioconductor since BioC 2.7 (R-2.12) (8.5 years)
License GPL-2
Depends R (>= 2.11.0), methods, Biobase, Rsamtools, GenomicAlignments
Imports GenomicRanges, IRanges, edgeR, DESeq, DBI
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me ampliQueso
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rnaSeqMap_2.40.1.tar.gz
Windows Binary rnaSeqMap_2.40.1.zip
Mac OS X 10.11 (El Capitan) rnaSeqMap_2.40.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/rnaSeqMap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rnaSeqMap
Package Short Url http://bioconductor.org/packages/rnaSeqMap/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: