msmsEDA

DOI: 10.18129/B9.bioc.msmsEDA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see msmsEDA.

Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: 3.8

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at gmail.com>

Citation (from within R, enter citation("msmsEDA")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("msmsEDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msmsEDA")

 

PDF R Script msmsEDA: Batch effects detection in LC-MSMS experiments
PDF   Reference Manual

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.20.1
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-2
Depends R (>= 3.0.1), MSnbase
Imports MASS, gplots, RColorBrewer
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me msmsTests
Imports Me
Suggests Me Harman, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msmsEDA_1.20.1.tar.gz
Windows Binary msmsEDA_1.20.1.zip
Mac OS X 10.11 (El Capitan) msmsEDA_1.20.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/msmsEDA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msmsEDA
Package Short Url http://bioconductor.org/packages/msmsEDA/
Package Downloads Report Download Stats

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