methylInheritance

DOI: 10.18129/B9.bioc.methylInheritance    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see methylInheritance.

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Bioconductor version: 3.8

Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.

Author: Astrid DeschĂȘnes, Pascal Belleau and Arnaud Droit

Maintainer: Astrid Deschenes <adeschen at hotmail.com>

Citation (from within R, enter citation("methylInheritance")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("methylInheritance")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylInheritance")

 

HTML R Script Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
PDF   Reference Manual
Text   NEWS

Details

biocViews BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version 1.6.1
In Bioconductor since BioC 3.5 (R-3.4) (2 years)
License Artistic-2.0
Depends R (>= 3.4)
Imports methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus
LinkingTo
Suggests BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim
SystemRequirements
Enhances
URL https://github.com/adeschen/methylInheritance
BugReports https://github.com/adeschen/methylInheritance/issues
Depends On Me
Imports Me
Suggests Me methInheritSim
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylInheritance_1.6.1.tar.gz
Windows Binary methylInheritance_1.6.1.zip
Mac OS X 10.11 (El Capitan) methylInheritance_1.6.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/methylInheritance
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylInheritance
Package Short Url http://bioconductor.org/packages/methylInheritance/
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