matchBox

DOI: 10.18129/B9.bioc.matchBox    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see matchBox.

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: 3.8

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("matchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matchBox")

 

PDF	R Script	Working with the matchBox package
PDF		Reference Manual

Details

biocViews	Annotation, Microarray, MultipleComparison, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 2.11 (R-2.15) (6.5 years)
License	Artistic-2.0
Depends	R (>= 2.8.0)
Imports
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	matchBox_1.24.0.tar.gz
Windows Binary	matchBox_1.24.0.zip
Mac OS X 10.11 (El Capitan)	matchBox_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/matchBox
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/matchBox
Package Short Url	http://bioconductor.org/packages/matchBox/
Package Downloads Report	Download Stats