iSeq

DOI: 10.18129/B9.bioc.iSeq    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see iSeq.

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: 3.8

Bayesian hidden Ising models are implemented to identify IP-enriched genomic regions from ChIP-seq data. They can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qianxing.mo at moffitt.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("iSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")

 

PDF	R Script	iSeq
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Sequencing, Software
Version	1.34.0
In Bioconductor since	BioC 2.7 (R-2.12) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSeq_1.34.0.tar.gz
Windows Binary	iSeq_1.34.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	iSeq_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iSeq
Package Short Url	http://bioconductor.org/packages/iSeq/
Package Downloads Report	Download Stats