hierinf

DOI: 10.18129/B9.bioc.hierinf    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see hierinf.

Hierarchical Inference

Bioconductor version: 3.8

Tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.

Author: Claude Renaux [aut, cre], Laura Buzdugan [aut], Markus Kalisch [aut], Peter Bühlmann [aut]

Maintainer: Claude Renaux <renaux at stat.math.ethz.ch>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("hierinf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hierinf")

 

PDF	R Script	vignette-hierinf.Rnw
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Clustering, GenomeWideAssociation, LinkageDisequilibrium, Regression, SNP, Software
Version	1.0.0
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL-3 | file LICENSE
Depends	R (>= 3.5.0)
Imports	fmsb, glmnet, methods, parallel, stats
LinkingTo
Suggests	knitr, MASS, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hierinf_1.0.0.tar.gz
Windows Binary	hierinf_1.0.0.zip
Mac OS X 10.11 (El Capitan)	hierinf_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hierinf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hierinf
Package Short Url	http://bioconductor.org/packages/hierinf/
Package Downloads Report	Download Stats