dcGSA

DOI: 10.18129/B9.bioc.dcGSA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see dcGSA.

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles

Bioconductor version: 3.8

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles. In longitudinal studies, the gene expression profiles were collected at each visit from each subject and hence there are multiple measurements of the gene expression profiles for each subject. The dcGSA package could be used to assess the associations between gene sets and clinical outcomes of interest by fully taking advantage of the longitudinal nature of both the gene expression profiles and clinical outcomes.

Author: Jiehuan Sun [aut, cre], Jose Herazo-Maya [aut], Xiu Huang [aut], Naftali Kaminski [aut], and Hongyu Zhao [aut]

Maintainer: Jiehuan sun <jiehuan.sun at yale.edu>

Citation (from within R, enter citation("dcGSA")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("dcGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews GeneExpression, GeneSetEnrichment, ImmunoOncology, Microarray, RNASeq, Sequencing, Software, StatisticalMethod
Version 1.10.1
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License GPL-2
Depends R (>= 3.3), Matrix
Imports BiocParallel
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package dcGSA_1.10.1.tar.gz
Windows Binary dcGSA_1.10.1.zip
Mac OS X 10.11 (El Capitan) dcGSA_1.10.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/dcGSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dcGSA
Package Short Url http://bioconductor.org/packages/dcGSA/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: