caOmicsV

DOI: 10.18129/B9.bioc.caOmicsV    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see caOmicsV.

Visualization of multi-dimentional cancer genomics data

Bioconductor version: 3.8

caOmicsV package provides methods to visualize multi-dimentional cancer genomics data including of patient information, gene expressions, DNA methylations, DNA copy number variations, and SNP/mutations in matrix layout or network layout.

Author: Henry Zhang

Maintainer: Henry Zhang <hzhang at mail.nih.gov>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("caOmicsV")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("caOmicsV")

 

PDF	R Script	Intrudoction_to_caOmicsV
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, Network, RNASeq, Software, Visualization
Version	1.12.1
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL (>=2.0)
Depends	R (>= 3.2), igraph (>= 0.7.1), bc3net (>= 1.0.2)
Imports
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Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	caOmicsV_1.12.1.tar.gz
Windows Binary	caOmicsV_1.12.1.zip
Mac OS X 10.11 (El Capitan)	caOmicsV_1.12.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/caOmicsV
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/caOmicsV
Package Short Url	http://bioconductor.org/packages/caOmicsV/
Package Downloads Report	Download Stats