RTopper

DOI: 10.18129/B9.bioc.RTopper    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RTopper.

This package is designed to perform Gene Set Analysis across multiple genomic platforms

Bioconductor version: 3.8

the RTopper package is designed to perform and integrate gene set enrichment results across multiple genomic platforms.

Author: Luigi Marchionni <marchion at jhu.edu>, Svitlana Tyekucheva <svitlana at jimmy.harvard.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("RTopper")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RTopper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTopper")

 

PDF R Script RTopper user's manual
PDF   Reference Manual
Text   LICENSE

Details

biocViews Microarray, Software
Version 1.28.0
In Bioconductor since BioC 2.9 (R-2.14) (7.5 years)
License GPL (>= 3)
Depends R (>= 2.11.0), Biobase
Imports limma, multtest
LinkingTo
Suggests limma, org.Hs.eg.db, KEGG.db, GO.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTopper_1.28.0.tar.gz
Windows Binary RTopper_1.28.0.zip
Mac OS X 10.11 (El Capitan) RTopper_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RTopper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTopper
Package Short Url http://bioconductor.org/packages/RTopper/
Package Downloads Report Download Stats

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