PANR

DOI: 10.18129/B9.bioc.PANR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PANR.

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: 3.8

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <xin_wang at hms.harvard.edu>

Maintainer: Xin Wang <xin_wang at hms.harvard.edu>

Citation (from within R, enter citation("PANR")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("PANR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PANR")

 

PDF R Script Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, Clustering, GraphAndNetwork, ImmunoOncology, NetworkInference, Software, Visualization
Version 1.28.1
In Bioconductor since BioC 2.9 (R-2.14) (7.5 years)
License Artistic-2.0
Depends R (>= 2.14), igraph
Imports graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR
LinkingTo
Suggests snow
SystemRequirements
Enhances
URL
Depends On Me
Imports Me Mulder2012
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PANR_1.28.1.tar.gz
Windows Binary PANR_1.28.1.zip
Mac OS X 10.11 (El Capitan) PANR_1.28.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/PANR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PANR
Package Short Url http://bioconductor.org/packages/PANR/
Package Downloads Report Download Stats

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