Director

DOI: 10.18129/B9.bioc.Director    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Director.

A dynamic visualization tool of multi-level data

Bioconductor version: 3.8

Director is an R package designed to streamline the visualization of molecular effects in regulatory cascades. It utilizes the R package htmltools and a modified Sankey plugin of the JavaScript library D3 to provide a fast and easy, browser-enabled solution to discovering potentially interesting downstream effects of regulatory and/or co-expressed molecules. The diagrams are robust, interactive, and packaged as highly-portable HTML files that eliminate the need for third-party software to view. This enables a straightforward approach for scientists to interpret the data produced, and bioinformatics developers an alternative means to present relevant data.

Author: Katherine Icay [aut, cre]

Maintainer: Katherine Icay <katherine.icay at helsinki.fi>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Director")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Director")

 

PDF	R Script	Using Director
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.3)
Imports	htmltools, utils, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/kzouchka/Director
BugReports	https://github.com/kzouchka/Director/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Director_1.8.0.tar.gz
Windows Binary	Director_1.8.0.zip
Mac OS X 10.11 (El Capitan)	Director_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Director
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Director
Package Short Url	http://bioconductor.org/packages/Director/
Package Downloads Report	Download Stats