trim_motifs {universalmotif}R Documentation

Trim motifs.

Description

Remove edges of motifs with low information content.

Usage

trim_motifs(motifs, min.ic = 0.25)

Arguments

motifs

See convert_motifs() for acceptable formats.

min.ic

numeric(1) Minimum allowed information content. See convert_type() for a discussion on information content.

Value

Motifs See convert_motifs() for available output formats.

Author(s)

Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca

See Also

create_motif(), convert_type()

Examples

jaspar <- read_jaspar(system.file("extdata", "jaspar.txt",
                                  package = "universalmotif"))
jaspar.trimmed <- trim_motifs(jaspar)


[Package universalmotif version 1.0.22 Index]