read_cisbp {universalmotif} | R Documentation |
Import CIS-BP formatted motifs. See http://cisbp.ccbr.utoronto.ca/index.php. Assumed to be DNA motifs.
read_cisbp(file, skip = 0)
file |
|
skip |
|
list
universalmotif objects.
Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca
Weirauch M, Yang A, Albu M, Cote A, Montenegro-Montero A, Drewe P, Najafabadi H, Lambert S, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano J, Galli M, Lewsey M, Huang E, Mukherjee T, Chen X, Reece-Hoyes J, Govindarajan S, Shaulsky G, Walhout A, Bouget F, Ratsch G, Larrondo L, Ecker J, Hughes T (2014). “Determination and inference of eukaryotic transcription factor sequence specificity.” Cell, 158, 1431-1443.
Other read_motifs: read_homer
,
read_jaspar
, read_matrix
,
read_meme
, read_motifs
,
read_transfac
, read_uniprobe
cisbp <- read_cisbp(system.file("extdata", "cisbp.txt", package = "universalmotif"))