getGDS {phantasus} | R Documentation |
getGDS
return the ExpressionSet object corresponding
to GEO Dataset identifier.
getGDS(name, destdir = tempdir(), mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
name |
String, containing GEO identifier of the dataset. It should start with 'GSE' or 'GDS' and can include exact GPL to annotate dataset, separated with dash ('-') from the identifier. |
destdir |
Directory for caching loaded Series and GPL files from GEO database. |
mirrorPath |
URL string which specifies the source of matrices. |
ExpressionSet object wrapped in list, that was available by given
in name
variable GEO identifier.
getGDS('GDS4922')