getGSE {phantasus} | R Documentation |
getGSE
return the ExpressionSet object(s) corresponding
to GEO Series Identifier.
getGSE(name, destdir = tempdir(), mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
name |
String, containing GEO identifier of the dataset. It should start with 'GSE' or 'GDS' and can include exact GPL to annotate dataset, separated with dash ('-') from the identifier. |
destdir |
Directory for caching loaded Series and GPL files from GEO database. |
mirrorPath |
URL string which specifies the source of matrices. |
List of ExpressionSet objects, that were available by given
in name
variable GEO identifier.
## Not run: getGSE('GSE14308', destdir = 'cache') getGSE('GSE27112') ## End(Not run) getGSE('GSE53986')