limmaAnalysis {phantasus}R Documentation

Differential Expression analysis.

Description

limmaAnalysis performs differential expression analysis from limma package and returns a ProtoBuf-serialized resulting de-matrix.

Usage

limmaAnalysis(es, fieldValues)

Arguments

es

ExpressionSet object. It should be normalized for more accurate analysis.

fieldValues

Vector of comparison values, mapping categories' names to columns/samples

Value

Name of the file containing serialized de-matrix.

Examples

## Not run: 
data(es)
limmaAnalysis(es, fieldValues = c("A", "A", "A", "B", "B"))

## End(Not run)

[Package phantasus version 1.2.1 Index]