selectRefSeq {methVisual} | R Documentation |
Uploading genomic sequence
selectRefSeq(sFileName)
sFileName |
path and name of genomic sequence to be uploaded |
Uploading genomic sequence
This function is used in order to read the reference sequence into the R environment. The reference sequences must be in fasta format. The user must give the path and name of the reference sequence in a character string.
Arie Zackay <arie.zackay@mail.huji.ac.il>, Christine Steinhoff <steinhof@molgen.mpg.de>
## make sure that you have reading ## permission under R.home() directory. If you do not have permission ## choose your own path. #dir.create(file.path(R.home(component="home"),"/BiqAnalyzer")) BiqAnalyzer_path <- file.path(tempdir(), "BiqAnalyzer") dir.create(BiqAnalyzer_path) makeLocalExpDir(dataPath="/examples/BiqAnalyzer", localDir=BiqAnalyzer_path) refseq <- selectRefSeq(file.path(BiqAnalyzer_path, "Master_Sequence.txt"))