cgInAlign {methVisual} | R Documentation |
Calculating amount of CpGs between alignments border
cgInAlign(methData)
methData |
An object of type list that contains information on the pairwise alignments and methylation status of all CpG motifs under study. Created by applying MethAlignNW() |
This function computes the amount of CpGs on the positions corresponds to genomic sequence over all sequences under study between the alignment borders.
Integer vector of CpG amount
Arie Zackay <arie.zackay@mail.huji.ac.il>, Christine Steinhoff <steinhof@molgen.mpg.de>
data(methData) cgInAlign(methData)