counts,Maser-method {maser}R Documentation

Retrieve raw read counts values from a maser object.

Description

Retrieve raw read counts values from a maser object.

Usage

## S4 method for signature 'Maser'
counts(object, type = c("A3SS", "A5SS", "SE", "RI", "MXE"))

Arguments

object

a maser object.

type

a character indicating the splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE").

Value

a matrix.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
head(counts(hypoxia, "SE"))

[Package maser version 1.0.0 Index]