DiStatis-class {kimod} | R Documentation |
DiStatis
DiStatis S4 class (kimod: k-tables approach to integrate multiple Omics-Data
Multiple dataset)Statis with Distance options implementation.
DiStatis (Statis with Distance options)
Bootstrap Implementation
Biplot Implementation with variable selection
Clustering of variables
Plotting compromise, bootstrap, trajectories, Biplot.
distances.methods: The character indicating the metrics used.
Inertia.RV: Inertia (%) explained for all tables.
RV: Vectorial Correlation Matrix between studies.
Euclid.Im: Euclidean Image of all studies.
Inertia.Comp: Inertia (%) explained for all dimensions of compromise matrix.
Compromise.Coords: Projection of all observations in compromise (Coords).
Compromise.Matrix: Compromise Matrix from statis methodology.
RQO: Representation Quality of observations in compromise matrix.
Trajectories: List of trajectories from Statis methodology
Inertia.RV(x)
, Inertia.RV(x) <- value
: Inertia (%) explained for all tables.
RV(x)
, RV(x) <- value
: Vectorial Correlation Matrix between studies.
Euclid.Im(x)
,Euclid.Im(x) <- value
: Euclidean Image of all studies.
Inertia.Comp(x)
,Inertia.Comp(x) <- value
:: Inertia (%) explained for all dimensions of compromise matrix.
Compromise.Coords(x)
,Compromise.Coords(x) <- value
: Projection of all observations in compromise (Coords).
Compromise.Matrix(x)
,Compromise.Matrix(x) <- value
: Compromise Matrix from statis methodology.
RQO(x)
,RQO(x) <- value
: Representation Quality of observations in compromise matrix.
Trajectories(x)
,Trajectories(x) <- value
: List of trajectories from Statis methodology.
Basic output for DiStatis class
Basic statistics for DiStatis class
Getters for their respective slots.
M L Zingaretti, J A Demey-Zambrano, J L Vicente Villardon, J R Demey
Abdi, H., Williams, L.J., Valentin, D., & Bennani-Dosse, M. (2012). STATIS and DISTATIS: optimum multitable principal component analysis and three way metric multidimensional scaling. WIREs Comput Stat, 4, 124-167.
Escoufier, Y. (1976). Operateur associe a un tableau de donnees. Annales de laInsee, 22-23, 165-178.
Escoufier, Y. (1987). The duality diagram: a means for better practical applications. En P. Legendre & L. Legendre (Eds.), Developments in Numerical Ecology, pp. 139-156, NATO Advanced Institute, Serie G. Berlin: Springer.
L'Hermier des Plantes, H. (1976). Structuration des Tableaux a Trois Indices de la Statistique. [These de Troisieme Cycle]. University of Montpellier, France.
CompPlot
,
Biplot
DiStatis
, and additional related
DiStatis class functions.
showClass("DiStatis")