hetsMasked {genotypeeval} | R Documentation |
Number hets in masked GRanges
hetsMasked(x, masked.limits, non.masked.limits, masked)
x |
myvcf of interest |
masked.limits |
Limits for self chain region (lower and upper) |
non.masked.limits |
Limits for non self chain region (lower and upper) |
masked |
GRanges of difficult regions (repeat masked, paralogs, self chain, etc) |
list with name, logical vector (passed or not), numeric vector number hets in masked region and not in masked region