titv {genotypeeval} | R Documentation |
Transition transversion ratio in coding and non-coding
titv(x, coding, ll.nc, ul.nc, ll.c, ul.c)
x |
myvcf of interest |
coding |
GRanges of coding regions |
ll.nc |
lower limit to pass for transition transversion in noncoding |
ul.nc |
upper limit to pass for transition transversion in noncoding |
ll.c |
lower limit to pass for transition transversion in coding |
ul.c |
upper limit to pass for transition transversion in coding |
list with name, logical vector (passed or not), numeric vector of transition transversion ratio in coding and non coding regions