GoldDataParam {genotypeeval} | R Documentation |
User Constructor for class
GoldDataParam(titv.coding.confirmed.l = 0, titv.coding.confirmed.u = 5, titv.noncoding.confirmed.l = 0, titv.noncoding.confirmed.u = 5, titv.coding.unconfirmed.l = 0, titv.coding.unconfirmed.u = 5, titv.noncoding.unconfirmed.l = 0, titv.noncoding.unconfirmed.u = 5, percent.confirmed.limits = 0, percent.het.rare.limits = 0)
titv.coding.confirmed.l |
Lower limit of transition transversion ratio in coding confirmed |
titv.coding.confirmed.u |
upper limit of transition transverion ratio coding confirmed |
titv.noncoding.confirmed.l |
Lower limit of transition transversion ratio in noncoding confirmed |
titv.noncoding.confirmed.u |
upper limit of transition transverion ratio noncoding confirmed |
titv.coding.unconfirmed.l |
Lower limit of transition transversion ratio in coding unconfirmed |
titv.coding.unconfirmed.u |
upper limit of transition transverion ratio coding unconfirmed |
titv.noncoding.unconfirmed.l |
Lower limit of transition transversion ratio in noncoding unconfirmed |
titv.noncoding.unconfirmed.u |
upper limit of transition transverion ratio noncoding unconfirmed |
percent.confirmed.limits |
lower limit, upper limit, percent confirmed in Gold comparator |
percent.het.rare.limits |
lower limit, upper limit, (Percent Het in Rare, MAF < 0.01 in Gold) / Total number of Heterozygotes |
Object of type GoldDataParam
gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93)