goldCompare {genotypeeval}R Documentation

Comparator to gold standard

Description

Comparator to gold standard

Usage

goldCompare(x, gr, coding, limits.c, limits.uc, percent.c, name.of.gold)

Arguments

x

myvcf of interest

gr

gold GRanges

coding

Coding GRanges

limits.c

all confirmed limits

limits.uc

all unconfirmed limits

percent.c

percent confirmed limit

name.of.gold

user readable name

Value

list with name, logical vector (passed or not), numeric vector of transition transversion in coding and non coding regions in confirmed and non confirmed


[Package genotypeeval version 1.14.0 Index]