enrichDAVID {clusterProfiler} | R Documentation |
enrichment analysis by DAVID
enrichDAVID(gene, idType = "ENTREZ_GENE_ID", universe, minGSSize = 10, maxGSSize = 500, annotation = "GOTERM_BP_FAT", pvalueCutoff = 0.05, pAdjustMethod = "BH", qvalueCutoff = 0.2, species = NA, david.user)
gene |
input gene |
idType |
id type |
universe |
background genes |
minGSSize |
minimal size of genes annotated for testing |
maxGSSize |
maximal size of genes annotated for testing |
annotation |
david annotation |
pvalueCutoff |
pvalueCutoff |
pAdjustMethod |
one of "BH" and "bonferroni" |
qvalueCutoff |
qvalutCutoff |
species |
species |
david.user |
david user |
A enrichResult
instance
Guangchuang Yu