declare.bound {Starr}R Documentation

Declare bound probes for a given error rate control

Description

An internal function to be used by cmarrt.peak.

Usage

declare.bound(alpha, method, pv.cmarrt, pv.indep)

Arguments

alpha

error rate control for declaring bound region.

method

correction method inherited from p.adjust.

pv.cmarrt

a numeric vector of p-values for MA statistics obtained under correlation structure via Gaussian approximation.

pv.indep

a numeric vector of p-values for MA statistics obtained under independence via Gaussian approximation.

Value

bdd.cmarrt

vector of 0's(unbound) or 1's(bound) for each probe under correlation.

bdd.indep

vector of 0's(unbound) or 1's(bound) for each probe under independence.

Author(s)

Pei Fen Kuan, Adam Hinz

References

P.F. Kuan, H. Chun, S. Keles (2008). CMARRT: A tool for the analysiz of ChIP-chip data from tiling arrays by incorporating the correlation structure. Pacific Symposium of Biocomputing13:515-526.

See Also

cmarrt.peak


[Package Starr version 1.38.0 Index]