declare.bound {Starr} | R Documentation |
An internal function to be used by cmarrt.peak
.
declare.bound(alpha, method, pv.cmarrt, pv.indep)
alpha |
error rate control for declaring bound region. |
method |
correction method inherited from |
pv.cmarrt |
a numeric vector of p-values for MA statistics obtained under correlation structure via Gaussian approximation. |
pv.indep |
a numeric vector of p-values for MA statistics obtained under independence via Gaussian approximation. |
bdd.cmarrt |
vector of 0's(unbound) or 1's(bound) for each probe under correlation. |
bdd.indep |
vector of 0's(unbound) or 1's(bound) for each probe under independence. |
Pei Fen Kuan, Adam Hinz
P.F. Kuan, H. Chun, S. Keles (2008). CMARRT: A tool for the analysiz of ChIP-chip data from tiling arrays by incorporating the correlation structure. Pacific Symposium of Biocomputing13:515-526.