makeProbeAnno {Starr}R Documentation

Creating a probeAnno object

Description

Creates a probeAnno object (package: Ringo) from a given Affymetrix bpmap file or a Nimblegen POS file. The posToProbeAnno function from the Ringo package is called to build the object.

Usage

makeProbeAnno(posFile=NULL, bpmap=NULL, probeIDAsStrings=F)

Arguments

posFile

path to the POS file

bpmap

Either a list, created by the function readBpmap() from the affy package, or a path to the bpmap file.

probeIDAsStrings

should the mapping of the probes to the rows in the assayData be integers or characters.

Author(s)

Benedikt Zacher zacher@lmb.uni-muenchen.de

See Also

posToProbeAnno,readBpmap


[Package Starr version 1.38.0 Index]