classifyNewSamples-methods {Rmagpie} | R Documentation |
This method classify one or several new samples provided in the file 'newSamplesFile' using the final classifier build by 'findFinalClassifier'.
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newSamplesFile |
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optionValue |
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This method is only applicable on objects of class assessment.
data('vV70genesDataset') expeOfInterest <- new("assessment", dataset=vV70genes, noFolds1stLayer=10, noFolds2ndLayer=9, classifierName="svm", typeFoldCreation="original", svmKernel="linear", noOfRepeat=2, featureSelectionOptions=new("geneSubsets", optionValues=c(1,2,4,8,16,32,64,70))) # Build the final classifier expeOfInterest <- findFinalClassifier(expeOfInterest) ## Not run: classifyNewSamples(expeOfInterest, "pathToFile/testSamples_geneExpr.txt", 4) ## End(Not run) expeOfInterest <- runOneLayerExtCV(expeOfInterest) ## Not run: classifyNewSamples(expeOfInterest, "pathToFile/testSamples_geneExpr.txt") ## End(Not run)