tnsGSEA2,TNS-method {RTNsurvival} | R Documentation |
Works as a wrapper for tni.gsea2
, performing a
2-tailed GSEA analysis on a TNI class object and integrating
the results into the TNS class object.
## S4 method for signature 'TNS' tnsGSEA2(tns, ...)
tns |
A TNS class, which has been preprocessed |
... |
Additional parameters passed to |
A TNS class, with added regulon activity scores.
tni.gsea2
for information on all
parameters.
# load survival data data(survival.data) # load TNI-object data(stni, package = "RTN") stns <- tni2tnsPreprocess(stni, survivalData = survival.data, keycovar = c('Grade','Age'), time = 1, event = 2) stns <- tnsGSEA2(stns) ## Not run: # parallel version with SNOW package! library(snow) options(cluster=makeCluster(3, "SOCK")) stns <- tnsGSEA2(stns) stopCluster(getOption("cluster")) ## End(Not run)