tnsAREA3,TNS-method {RTNsurvival} | R Documentation |
Uses aREA
3-tail algorithm to compute regulon activity
for TNS class objects.
## S4 method for signature 'TNS' tnsAREA3(tns, ...)
tns |
A TNS class, which has been preprocessed |
... |
Additional parameters passed to |
A TNS class, with added regulon activity scores.
Alvarez et al. Functional characterization of somatic mutations in cancer using network-based inference of protein activity. Nature Genetics, 48(8):838-847, 2016.
aREA
for additional details.
# load survival data data(survival.data) # load TNI-object data(stni, package = "RTN") stns <- tni2tnsPreprocess(stni, survivalData = survival.data, keycovar = c('Grade','Age'), time = 1, event = 2) stns <- tnsAREA3(stns)