phyloseq_to_edgeR {PathoStat}R Documentation

Convert phyloseq OTU count data into DGEList for edgeR package

Description

Further details.

Usage

phyloseq_to_edgeR(physeq, group, method = "RLE", ...)

Arguments

physeq

(Required).

group

(Required). A character vector or factor giving the experimental group/condition for each sample/library.

method

(Optional).

...

Additional arguments passed on to

Value

dispersion

Examples

data_dir_test <- system.file("data", package = "PathoStat")
pstat_test <- loadPstat(indir=data_dir_test,
infileName="pstat_data_2_L1.rda")
phyloseq_to_edgeR(pstat_test, group="Sex")

[Package PathoStat version 1.8.4 Index]