startRegionString {ORFik}R Documentation

Get -20,20 start region as DNA characters per gr group

Description

Get -20,20 start region as DNA characters per gr group

Usage

startRegionString(grl, tx, faFile, groupBy = NULL)

Arguments

grl

a GRangesList to find regions

tx

a GRangesList of transcripts containing grl

faFile

a FaFile from the fasta file, see ?FaFile. Can also be path to fastaFile with fai file in same dir.

groupBy

(NULL) column to group grl by, if NULL group by names(gr)

Value

a character vector of start regions


[Package ORFik version 1.2.1 Index]