windowPerGroup {ORFik} | R Documentation |
If downstreamFrom is 20, it means the window will start -20 downstream of gr start site. It will keep exon structure of tx
windowPerGroup(gr, tx, downstream = 0L, upstream = 0L)
gr |
a GRanges object (startSites and others, must be single point) |
tx |
a GRangesList of transcripts or (container region) |
downstream |
an integer, relative region to get downstream from |
upstream |
an integer vector, relative region to get upstream from. |
a GRanges/GRangesList object if exon/introns
Other ExtendGenomicRanges: asTX
,
coveragePerTiling
,
overlapsToCoverage
,
pmapFromTranscriptF
,
reduceKeepAttr
, tile1
,
txSeqsFromFa