readWidths {ORFik}R Documentation

Get RiboSeq widths

Description

Input a ribo-seq object and get width of reads, this is to avoid confusion between width, qwidth and meta column containing original read width.

Usage

readWidths(reads)

Arguments

reads

a GRanges or GAlignment object.

Details

If input is p-shifted and GRanges, the "$score" or "$size" colum" must exist, and contain the original read widths. ORFik P-shifting creates a $size column, other softwares like shoelaces creates a score column

Value

an integer vector of widths


[Package ORFik version 1.2.1 Index]