txSeqsFromFa {ORFik}R Documentation

Get transcript sequence from a GrangesList and a faFile or BSgenome

Description

A small safety wrapper around extractTranscriptSeqs

Usage

txSeqsFromFa(grl, faFile, is.sorted = FALSE)

Arguments

grl

a GRangesList object

faFile

FaFile or BSgenome used to find the transcripts,

is.sorted

a speedup, if you know the ranges are sorted

Value

a DNAStringSet of the transcript sequences

See Also

Other ExtendGenomicRanges: asTX, coveragePerTiling, overlapsToCoverage, pmapFromTranscriptF, reduceKeepAttr, tile1, windowPerGroup


[Package ORFik version 1.2.1 Index]