convertToOneBasedRanges {ORFik}R Documentation

Convert a GRanges Object to 1 width reads

Description

There are 3 ways of doing this 1. Take 5' ends, reduce away rest (5prime) 2. Tile and include all (tileAll) 3. Take middle point per GRanges (middle)

Usage

convertToOneBasedRanges(gr, method = "5prime", addScoreColumn = FALSE)

Arguments

gr

GRanges Object to reduce

method

the method to reduce, see info. (5prime defualt)

addScoreColumn

logical (FALSE), if TRUE, add a score column that sums up the hits per position.

Value

Converted GRanges object

See Also

Other utils: bedToGR, findFa, fread.bed, is.gr_or_grl, is.grl, validGRL


[Package ORFik version 1.2.1 Index]