startRegionString {ORFik} | R Documentation |
Get -20,20 start region as DNA characters per gr group
startRegionString(grl, tx, faFile, groupBy = NULL)
grl |
a GRangesList to find regions |
tx |
a GRangesList of transcripts containing grl |
faFile |
a FaFile from the fasta file, see ?FaFile. Can also be path to fastaFile with fai file in same dir. |
groupBy |
(NULL) column to group grl by, if NULL group by names(gr) |
a character vector of start regions