pmapFromTranscriptF {ORFik} | R Documentation |
Fixes a bug in function, and should have 10x speedup Also removes hit column for you
pmapFromTranscriptF(ranges, grl, indices)
ranges |
IRanges of ranges within grl |
grl |
the "transcripts" that contain ranges, GRangesList |
indices |
integer vector of which index of grl ranges are from: (c(1,1,2)) means first two ranges are from grl[1], third from grl[2]) |
A GrangesList of ranges mapped from transcripts
Other ExtendGenomicRanges: asTX
,
coveragePerTiling
,
overlapsToCoverage
,
reduceKeepAttr
, tile1
,
txSeqsFromFa
, windowPerGroup