asTX {ORFik}R Documentation

Map genomic to transcript coordinates by reference

Description

Map genomic to transcript coordinates by reference

Usage

asTX(grl, reference)

Arguments

grl

a GRangesList of ranges within the reference, grl must have column called names that gives grouping for result

reference

a GrangesList of ranges that include and are bigger or equal to grl ig. cds is grl and gene can be reference

Value

a GRangesList in transcript coordinates

See Also

Other ExtendGenomicRanges: coveragePerTiling, overlapsToCoverage, pmapFromTranscriptF, reduceKeepAttr, tile1, txSeqsFromFa, windowPerGroup


[Package ORFik version 1.2.1 Index]