pmapFromTranscriptF {ORFik}R Documentation

Faster more secure version of mapFromTranscripts

Description

Fixes a bug in function, and should have 10x speedup Also removes hit column for you

Usage

pmapFromTranscriptF(ranges, grl, indices)

Arguments

ranges

IRanges of ranges within grl

grl

the "transcripts" that contain ranges, GRangesList

indices

integer vector of which index of grl ranges are from: (c(1,1,2)) means first two ranges are from grl[1], third from grl[2])

Value

A GrangesList of ranges mapped from transcripts

See Also

Other ExtendGenomicRanges: asTX, coveragePerTiling, overlapsToCoverage, reduceKeepAttr, tile1, txSeqsFromFa, windowPerGroup


[Package ORFik version 1.2.1 Index]